RBPSpecificity - RBP Inherent Specificity and Variation Sensitivity Analysis Tool
Provides tools to analyze RNA Binding Protein (RBP) binding specificities from high-throughput sequencing data. Functions include calculating K-mer enrichment, Inherent Specificity (IS), and Mutational Sensitivity (VS), along with visualization of IS and VS. For detailed methodology and applications, please refer to our manuscript (see URL field or vignette).
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softwaremotifannotationsequencingcoveragegenomeannotationvisualizationgeneregulationkegg
4.69 score 1 stars 11 scripts 588 downloads
RBPEqBind - RNA-Binding Protein Competitive Binding Simulation
Simulates competitive binding of N RBPs to RNA sequences using an equilibrium binding model. Supports single sequences, concentration grids, and transcriptome-wide analysis. Designed for Bioconductor.
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mathematicalbiologysystemsbiologyfunctionalgenomicstranscriptomicsgeneregulationvisualization
4.48 score 1 stars 4 scripts 108 downloads